how to change Org URL in dynamics crm 2016 onpremise

I have difficulties in accessing dev environment,

I have cloned the prod to setup new dev environment using below article,https://dynamicscrmguru.com/2018/07/27/how-to-clone-crm-on-premise-server-setup-dynamics-crm-on-premise/

Prod Url: https://X.domain.com

Organisation :X,Y,Z

Kindly help me with the below,

1. When i browse locally http://localhost/X/main.aspx# is running fine and when i create case record it is getting inserted into the new DB Server table

but when browse the same from deployment manager->Organisation its directing to https://X.domain.com but record is getting inserted in prod table.

how to editnew Org url something like https://Xtest.domain.com 

2.when i opened IIS manager and browse the org its pointing to Z organisation how can i find X  Organisation in IIS

3.Currently i didnt change th report server URL still its pointing to production report server.Is it ok change the report url in DB and then edit in org in Deployment Manager.

4.how to connect to XRMtoolbox when i have the url of localhost http://localhost/X/main.aspx#

Kindly  help me finding and fixing the above.